PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0042s0630.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SRS
Protein Properties Length: 346aa    MW: 36136.8 Da    PI: 8.4981
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0042s0630.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702208.41.9e-641332893154
                  DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsst 89 
                             s t++CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWvpaa+rrerq +++a    a ++ +++  k++r    ++q+++s+t
  SapurV1A.0042s0630.1.p 133 SATTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCVTHVKSTWVPAARRRERQLMATA-GGGAGSTGSTSGVKKPRLI--SSQTTTSHT 216
                             57899********************************************9765555.4566666688888888875..777777888 PP

                  DUF702  90 klssaeskkeletss........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                             ++s+++ +  ++ s+        lP +v ++a frcvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e+
  SapurV1A.0042s0630.1.p 217 STSNTTRSYDTSSSHqdagfkerLPGQVTAPATFRCVRVTAVEDGEDEFAYQAVVKIGGHVFKGFLYDQGVET 289
                             88887777666665578999999***********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051428.1E-61135288IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.8E-27137179IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.5E-28239287IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGMVGLRDVF VVAPAAFNHH HQHHEQINLS TADPINASNA TALGVGVIPL LTAAPCLAPQ  60
NMDDQDLMNN GRNKVSGIHQ FWQNQGSQYI KKASNTTPIL DHHNNSSTAN FLLQSGNSAG  120
NGSGSLGGNS SSSATTTCQD CGNQAKKDCS HRRCRTCCKS RGFDCVTHVK STWVPAARRR  180
ERQLMATAGG GAGSTGSTSG VKKPRLISSQ TTTSHTSTSN TTRSYDTSSS HQDAGFKERL  240
PGQVTAPATF RCVRVTAVED GEDEFAYQAV VKIGGHVFKG FLYDQGVETR DGFPNISELH  300
LGGGRSSGNG VGRNGASSPI LDPSDVYGAS AGGLLGGSGY GNPIN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006379117.10.0hypothetical protein POPTR_0009s07510g
SwissprotQ94CK93e-94LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLU5G3K70.0U5G3K7_POPTR; Uncharacterized protein
STRINGPOPTR_0009s07510.11e-180(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-79Lateral root primordium (LRP) protein-related